IL_5HKV_090

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CCUCU*AUG

Length

8 nucleotides

Bulged bases

5HKV|1|X|U|2753

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HKV_090 not in the Motif Atlas

Homologous match to IL_4WF9_101

Geometric discrepancy: 0.0482

The information below is about IL_4WF9_101

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

5HKV|1|X|C|2707
5HKV|1|X|C|2708
5HKV|1|X|U|2709
5HKV|1|X|C|2710
5HKV|1|X|U|2711
*
5HKV|1|X|A|2752
5HKV|1|X|U|2753
5HKV|1|X|G|2754

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L14

Chain M

50S ribosomal protein L19