IL_5HKV_102

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CGAU*AUCAG

Length

9 nucleotides

Bulged bases

5HKV|1|X|A|176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HKV_102 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3104

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5HKV|1|X|C|152
5HKV|1|X|G|153
5HKV|1|X|A|154
5HKV|1|X|U|155
*
5HKV|1|X|A|173
5HKV|1|X|U|174
5HKV|1|X|C|175
5HKV|1|X|A|176
5HKV|1|X|G|177

Current chains

Chain X

23s ribosomal RNA

Nearby chains