IL_5HKV_114

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UAGGG*CCCAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HKV_114 not in the Motif Atlas

Homologous match to IL_4WF9_123

Geometric discrepancy: 0.3628

The information below is about IL_4WF9_123

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_61988.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5HKV|1|X|U|1757
5HKV|1|X|A|1758
5HKV|1|X|G|1759
5HKV|1|X|G|1760
5HKV|1|X|G|1761
*
5HKV|1|X|C|1768
5HKV|1|X|C|1769
5HKV|1|X|C|1770
5HKV|1|X|A|1771
5HKV|1|X|G|1772

Current chains

Chain X

23s ribosomal RNA

Nearby chains