IL_5HL7_004
3D structure
- PDB id
- 5HL7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.55 Å
Loop
- Sequence
- GGGAG*CUUUGAUC
- Length
- 13 nucleotides
- Bulged bases
- 5HL7|1|X|U|100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HL7_004 not in the Motif Atlas
- Homologous match to IL_4WF9_004
- Geometric discrepancy: 0.0717
- The information below is about IL_4WF9_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_71972.1
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
5HL7|1|X|G|81
5HL7|1|X|G|82
5HL7|1|X|G|83
5HL7|1|X|A|84
5HL7|1|X|G|85
*
5HL7|1|X|C|97
5HL7|1|X|U|98
5HL7|1|X|U|99
5HL7|1|X|U|100
5HL7|1|X|G|101
5HL7|1|X|A|102
5HL7|1|X|U|103
5HL7|1|X|C|104
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain R
- 50S ribosomal protein L24
- Chain V
- 50S ribosomal protein L29
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