IL_5HL7_022
3D structure
- PDB id
- 5HL7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.55 Å
Loop
- Sequence
- GCG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 5HL7|1|X|C|821, 5HL7|1|X|A|833, 5HL7|1|X|A|834, 5HL7|1|X|U|835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HL7_022 not in the Motif Atlas
- Geometric match to IL_4WF9_027
- Geometric discrepancy: 0.0768
- The information below is about IL_4WF9_027
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_89509.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
5HL7|1|X|G|820
5HL7|1|X|C|821
5HL7|1|X|G|822
*
5HL7|1|X|C|832
5HL7|1|X|A|833
5HL7|1|X|A|834
5HL7|1|X|U|835
5HL7|1|X|C|836
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain A
- 50S ribosomal protein L2
- Chain C
- 50S ribosomal protein L4
- Chain P
- 50S ribosomal protein L22
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