IL_5HL7_047

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CGAUG*CUAG

Length

9 nucleotides

Bulged bases

5HL7|1|X|U|1464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HL7_047 not in the Motif Atlas

Homologous match to IL_4WF9_054

Geometric discrepancy: 0.1356

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5HL7|1|X|C|1461
5HL7|1|X|G|1462
5HL7|1|X|A|1463
5HL7|1|X|U|1464
5HL7|1|X|G|1465
*
5HL7|1|X|C|1624
5HL7|1|X|U|1625
5HL7|1|X|A|1626
5HL7|1|X|G|1627

Current chains

Chain X

23S ribosomal RNA

Nearby chains