IL_5HL7_096

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GAUAAG*UGAAGC

Length

12 nucleotides

Bulged bases

5HL7|1|X|A|2792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HL7_096 not in the Motif Atlas

Homologous match to IL_4WF9_104

Geometric discrepancy: 0.0558

The information below is about IL_4WF9_104

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5HL7|1|X|G|2764
5HL7|1|X|A|2765
5HL7|1|X|U|2766
5HL7|1|X|A|2767
5HL7|1|X|A|2768
5HL7|1|X|G|2769
*
5HL7|1|X|U|2789
5HL7|1|X|G|2790
5HL7|1|X|A|2791
5HL7|1|X|A|2792
5HL7|1|X|G|2793
5HL7|1|X|C|2794

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L13