IL_5HL7_107
3D structure
- PDB id
- 5HL7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.55 Å
Loop
- Sequence
- ACGUUACUAACGACGAUAUGC*GAUUU
- Length
- 26 nucleotides
- Bulged bases
- 5HL7|1|X|U|72
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HL7_107 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.2277
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
5HL7|1|X|A|56
5HL7|1|X|C|57
5HL7|1|X|G|58
5HL7|1|X|U|59
5HL7|1|X|U|60
5HL7|1|X|A|61
5HL7|1|X|C|62
5HL7|1|X|U|63
5HL7|1|X|A|64
5HL7|1|X|A|65
5HL7|1|X|C|66
5HL7|1|X|G|67
5HL7|1|X|A|68
5HL7|1|X|C|69
5HL7|1|X|G|70
5HL7|1|X|A|71
5HL7|1|X|U|72
5HL7|1|X|A|73
5HL7|1|X|U|74
5HL7|1|X|G|75
5HL7|1|X|C|76
*
5HL7|1|X|G|109
5HL7|1|X|A|110
5HL7|1|X|U|111
5HL7|1|X|U|112
5HL7|1|X|U|113
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain Q
- 50S ribosomal protein L23
- Chain V
- 50S ribosomal protein L29
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