IL_5I4L_011
3D structure
- PDB id
- 5I4L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUC*GAGUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5I4L_011 not in the Motif Atlas
- Homologous match to IL_5TBW_011
- Geometric discrepancy: 0.0731
- The information below is about IL_5TBW_011
- Detailed Annotation
- Major groove platform with extra pair
- Broad Annotation
- Major groove platform
- Motif group
- IL_63450.3
- Basepair signature
- cWW-cWW-cSH-cWW
- Number of instances in this motif group
- 8
Unit IDs
5I4L|1|1|U|177
5I4L|1|1|U|178
5I4L|1|1|C|179
*
5I4L|1|1|G|237
5I4L|1|1|A|238
5I4L|1|1|G|239
5I4L|1|1|U|240
5I4L|1|1|G|241
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain M3
- 60S ribosomal protein L13-A
- Chain O5
- 60S ribosomal protein L35-A
- Chain O7
- 60S ribosomal protein L37-A
Coloring options: