IL_5I4L_023
3D structure
- PDB id
- 5I4L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGGG*UGCAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5I4L_023 not in the Motif Atlas
- Homologous match to IL_5TBW_023
- Geometric discrepancy: 0.0519
- The information below is about IL_5TBW_023
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_07235.3
- Basepair signature
- cWW-tSH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
5I4L|1|1|G|725
5I4L|1|1|G|726
5I4L|1|1|G|727
5I4L|1|1|G|728
*
5I4L|1|1|U|741
5I4L|1|1|G|742
5I4L|1|1|C|743
5I4L|1|1|A|744
5I4L|1|1|C|745
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain M8
- 60S ribosomal protein L18-A
- Chain N9
- 60S ribosomal protein L29
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