3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GGGG*UGCAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5I4L_023 not in the Motif Atlas
Homologous match to IL_5TBW_023
Geometric discrepancy: 0.0519
The information below is about IL_5TBW_023
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_07235.3
Basepair signature
cWW-tSH-L-tHS-cWW
Number of instances in this motif group
8

Unit IDs

5I4L|1|1|G|725
5I4L|1|1|G|726
5I4L|1|1|G|727
5I4L|1|1|G|728
*
5I4L|1|1|U|741
5I4L|1|1|G|742
5I4L|1|1|C|743
5I4L|1|1|A|744
5I4L|1|1|C|745

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain M8
60S ribosomal protein L18-A
Chain N9
60S ribosomal protein L29

Coloring options:


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