3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GAAUG*CGC
Length
8 nucleotides
Bulged bases
5I4L|1|1|U|2209
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5I4L_087 not in the Motif Atlas
Homologous match to IL_5TBW_087
Geometric discrepancy: 0.1444
The information below is about IL_5TBW_087
Detailed Annotation
Major groove platform with extra pair
Broad Annotation
Major groove platform
Motif group
IL_63450.5
Basepair signature
cWW-cHS-cWW-cWW-cWW
Number of instances in this motif group
7

Unit IDs

5I4L|1|1|G|2206
5I4L|1|1|A|2207
5I4L|1|1|A|2208
5I4L|1|1|U|2209
5I4L|1|1|G|2210
*
5I4L|1|1|C|2235
5I4L|1|1|G|2236
5I4L|1|1|C|2237

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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