3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UUUUUG*CGAAG
Length
11 nucleotides
Bulged bases
5I4L|1|1|U|3056, 5I4L|1|1|U|3058
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5I4L_117 not in the Motif Atlas
Homologous match to IL_5TBW_118
Geometric discrepancy: 0.0687
The information below is about IL_5TBW_118
Detailed Annotation
UAA/GAN related
Broad Annotation
UAA/GAN related
Motif group
IL_17136.4
Basepair signature
cWW-R-L-tHS-tHW-cWW
Number of instances in this motif group
18

Unit IDs

5I4L|1|1|U|3054
5I4L|1|1|U|3055
5I4L|1|1|U|3056
5I4L|1|1|U|3057
5I4L|1|1|U|3058
5I4L|1|1|G|3059
*
5I4L|1|1|C|3084
5I4L|1|1|G|3085
5I4L|1|1|A|3086
5I4L|1|1|A|3087
5I4L|1|1|G|3088

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain L3
60S ribosomal protein L3
Chain N4
60S ribosomal protein L24-A
Chain O1
60S ribosomal protein L31-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1747 s