IL_5I4L_155

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

5I4L|1|2|U|380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5I4L_155 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.0776

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

5I4L|1|2|G|363
5I4L|1|2|G|364
5I4L|1|2|G|365
*
5I4L|1|2|C|376
5I4L|1|2|G|377
5I4L|1|2|A|378
5I4L|1|2|U|379
5I4L|1|2|U|380
5I4L|1|2|C|381

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain S4

40S ribosomal protein S4-A

Chain S9

40S ribosomal protein S9-A