3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CAU*AAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5I4L_157 not in the Motif Atlas
Homologous match to IL_4V88_406
Geometric discrepancy: 0.1413
The information below is about IL_4V88_406
Detailed Annotation
Isolated near basepair
Broad Annotation
Isolated near basepair
Motif group
IL_76004.2
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
18

Unit IDs

5I4L|1|2|C|411
5I4L|1|2|A|412
5I4L|1|2|U|413
*
5I4L|1|2|A|420
5I4L|1|2|A|421
5I4L|1|2|G|422

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain N3
60S ribosomal protein L23-A
Chain S6
40S ribosomal protein S6-A

Coloring options:


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