IL_5I4L_184

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5I4L_184 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0673

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

5I4L|1|2|G|1111
5I4L|1|2|G|1112
5I4L|1|2|A|1113
5I4L|1|2|G|1114
5I4L|1|2|U|1115
5I4L|1|2|A|1116
5I4L|1|2|U|1117
5I4L|1|2|G|1118
*
5I4L|1|2|U|1129
5I4L|1|2|G|1130
5I4L|1|2|A|1131
5I4L|1|2|A|1132
5I4L|1|2|A|1133
5I4L|1|2|C|1134

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain Q1

60S ribosomal protein L41-A