3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
ACCGAGUAG*CGAAACU
Length
16 nucleotides
Bulged bases
5I4L|1|3|C|73
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5I4L_226 not in the Motif Atlas
Homologous match to IL_5TBW_377
Geometric discrepancy: 0.0623
The information below is about IL_5TBW_377
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.8
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

5I4L|1|3|A|72
5I4L|1|3|C|73
5I4L|1|3|C|74
5I4L|1|3|G|75
5I4L|1|3|A|76
5I4L|1|3|G|77
5I4L|1|3|U|78
5I4L|1|3|A|79
5I4L|1|3|G|80
*
5I4L|1|3|C|100
5I4L|1|3|G|101
5I4L|1|3|A|102
5I4L|1|3|A|103
5I4L|1|3|A|104
5I4L|1|3|C|105
5I4L|1|3|U|106

Current chains

Chain 3
5S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain L7
60S ribosomal protein L7-A
Chain M0
60S ribosomal protein L10
Chain N0
60S ribosomal protein L20-A
Chain N1
60S ribosomal protein L21-A

Coloring options:


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