IL_5I4L_228
3D structure
- PDB id
- 5I4L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5I4L_228 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.0329
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
5I4L|1|4|A|44
5I4L|1|4|C|45
5I4L|1|4|G|46
5I4L|1|4|C|47
5I4L|1|4|A|48
5I4L|1|4|G|49
5I4L|1|4|C|50
5I4L|1|4|G|51
5I4L|1|4|A|52
5I4L|1|4|A|53
5I4L|1|4|A|54
5I4L|1|4|U|55
5I4L|1|4|G|56
5I4L|1|4|C|57
5I4L|1|4|G|58
5I4L|1|4|A|59
5I4L|1|4|U|60
5I4L|1|4|A|61
5I4L|1|4|C|62
5I4L|1|4|G|63
5I4L|1|4|U|64
*
5I4L|1|4|A|96
5I4L|1|4|A|97
5I4L|1|4|U|98
5I4L|1|4|C|99
5I4L|1|4|U|100
Current chains
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain N5
- 60S ribosomal protein L25
- Chain O5
- 60S ribosomal protein L35-A
- Chain O7
- 60S ribosomal protein L37-A
- Chain O9
- 60S ribosomal protein L39
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