3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UACGAAUAAG*CGCUGAA
Length
17 nucleotides
Bulged bases
5I4L|1|5|A|3180, 5I4L|1|5|A|3186, 5I4L|1|5|U|3207, 5I4L|1|5|A|3209
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5I4L_353 not in the Motif Atlas
Homologous match to IL_5TBW_124
Geometric discrepancy: 0.087
The information below is about IL_5TBW_124
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_15174.1
Basepair signature
cWW-L-R-L-R-L-cWW-cSS-cWW-L
Number of instances in this motif group
2

Unit IDs

5I4L|1|5|U|3179
5I4L|1|5|A|3180
5I4L|1|5|C|3181
5I4L|1|5|G|3182
5I4L|1|5|A|3183
5I4L|1|5|A|3184
5I4L|1|5|U|3185
5I4L|1|5|A|3186
5I4L|1|5|A|3187
5I4L|1|5|G|3188
*
5I4L|1|5|C|3204
5I4L|1|5|G|3205
5I4L|1|5|C|3206
5I4L|1|5|U|3207
5I4L|1|5|G|3208
5I4L|1|5|A|3209
5I4L|1|5|A|3210

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain l6
60S ribosomal protein L6-A
Chain l9
60S ribosomal protein L9-A
Chain m4
60S ribosomal protein L14-A
Chain m6
60S ribosomal protein L16-A
Chain n0
60S ribosomal protein L20-A
Chain o3
60S ribosomal protein L33-A

Coloring options:


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