3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UUUG*CUUA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5I4L_357 not in the Motif Atlas
Homologous match to IL_5TBW_129
Geometric discrepancy: 0.0638
The information below is about IL_5TBW_129
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_67085.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
55

Unit IDs

5I4L|1|5|U|3300
5I4L|1|5|U|3301
5I4L|1|5|U|3302
5I4L|1|5|G|3303
*
5I4L|1|5|C|3311
5I4L|1|5|U|3312
5I4L|1|5|U|3313
5I4L|1|5|A|3314

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain l3
60S ribosomal protein L3
Chain m7
60S ribosomal protein L17-A
Chain o1
60S ribosomal protein L31-A

Coloring options:


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