3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UAUAAG*UGAAA
Length
11 nucleotides
Bulged bases
5I4L|1|6|U|66, 5I4L|1|6|A|68
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5I4L_371 not in the Motif Atlas
Homologous match to IL_4V88_390
Geometric discrepancy: 0.0599
The information below is about IL_4V88_390
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_87517.1
Basepair signature
cWW-L-R-L-R-tHS-L-cWW
Number of instances in this motif group
2

Unit IDs

5I4L|1|6|U|64
5I4L|1|6|A|65
5I4L|1|6|U|66
5I4L|1|6|A|67
5I4L|1|6|A|68
5I4L|1|6|G|69
*
5I4L|1|6|U|82
5I4L|1|6|G|83
5I4L|1|6|A|84
5I4L|1|6|A|85
5I4L|1|6|A|86

Current chains

Chain 6
18S ribosomal RNA

Nearby chains

Chain d4
40S ribosomal protein S24-A
Chain n4
60S ribosomal protein L24-A
Chain s6
40S ribosomal protein S6-A

Coloring options:


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