3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GUAUAAC*GCUAAUAC
Length
15 nucleotides
Bulged bases
5I4L|1|6|U|170
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5I4L_375 not in the Motif Atlas
Homologous match to IL_4V88_394
Geometric discrepancy: 0.0651
The information below is about IL_4V88_394
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_80604.3
Basepair signature
cWW-cWW-tWH-tWH-tHW-L-R-cWW
Number of instances in this motif group
4

Unit IDs

5I4L|1|6|G|143
5I4L|1|6|U|144
5I4L|1|6|A|145
5I4L|1|6|U|146
5I4L|1|6|A|147
5I4L|1|6|A|148
5I4L|1|6|C|149
*
5I4L|1|6|G|165
5I4L|1|6|C|166
5I4L|1|6|U|167
5I4L|1|6|A|168
5I4L|1|6|A|169
5I4L|1|6|U|170
5I4L|1|6|A|171
5I4L|1|6|C|172

Current chains

Chain 6
18S ribosomal RNA

Nearby chains

Chain d4
40S ribosomal protein S24-A
Chain n4
60S ribosomal protein L24-A
Chain s6
40S ribosomal protein S6-A

Coloring options:


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