IL_5I4L_401

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCUAAC*GCGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5I4L_401 not in the Motif Atlas

Homologous match to IL_4V88_421

Geometric discrepancy: 0.0715

The information below is about IL_4V88_421

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared related

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5I4L|1|6|G|703
5I4L|1|6|C|704
5I4L|1|6|U|705
5I4L|1|6|A|706
5I4L|1|6|A|707
5I4L|1|6|C|708
*
5I4L|1|6|G|730
5I4L|1|6|C|731
5I4L|1|6|G|732
5I4L|1|6|A|733
5I4L|1|6|A|734
5I4L|1|6|C|735

Current chains

Chain 6

18S ribosomal RNA

Nearby chains