3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GAAAAAAUU*AUAUUAGC
Length
17 nucleotides
Bulged bases
5I4L|1|6|U|794
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5I4L_406 not in the Motif Atlas
Homologous match to IL_4V88_425
Geometric discrepancy: 0.0835
The information below is about IL_4V88_425
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_53064.1
Basepair signature
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
Number of instances in this motif group
2

Unit IDs

5I4L|1|6|G|751
5I4L|1|6|A|752
5I4L|1|6|A|753
5I4L|1|6|A|754
5I4L|1|6|A|755
5I4L|1|6|A|756
5I4L|1|6|A|757
5I4L|1|6|U|758
5I4L|1|6|U|759
*
5I4L|1|6|A|791
5I4L|1|6|U|792
5I4L|1|6|A|793
5I4L|1|6|U|794
5I4L|1|6|U|795
5I4L|1|6|A|796
5I4L|1|6|G|797
5I4L|1|6|C|798

Current chains

Chain 6
18S ribosomal RNA

Nearby chains

Chain c1
40S ribosomal protein S11-A
Chain d2
40S ribosomal protein S22-A
Chain s4
40S ribosomal protein S4-A
Chain s9
40S ribosomal protein S9-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1962 s