IL_5I4L_438
3D structure
- PDB id
- 5I4L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUG*CUUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5I4L_438 not in the Motif Atlas
- Homologous match to IL_4V88_461
- Geometric discrepancy: 0.0623
- The information below is about IL_4V88_461
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
5I4L|1|6|C|1495
5I4L|1|6|U|1496
5I4L|1|6|U|1497
5I4L|1|6|G|1498
*
5I4L|1|6|C|1509
5I4L|1|6|U|1510
5I4L|1|6|U|1511
5I4L|1|6|G|1512
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c9
- 40S ribosomal protein S19-A
Coloring options: