IL_5I4L_479

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5I4L_479 not in the Motif Atlas

Homologous match to IL_8P9A_305

Geometric discrepancy: 0.0504

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5I4L|1|5|G|1898
5I4L|1|5|G|1899
5I4L|1|5|A|1900
5I4L|1|5|A|1901
5I4L|1|5|G|1902
5I4L|1|5|U|1903
5I4L|1|5|C|1904
5I4L|1|5|G|1905
5I4L|1|5|G|1906
*
5I4L|1|5|C|2333
5I4L|1|5|U|2334
5I4L|1|5|G|2335
5I4L|1|5|U|2336
5I4L|1|5|C|2337

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l3

60S ribosomal protein L3

Chain n3

60S ribosomal protein L23-A