IL_5I4L_482

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUUG*CUUGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5I4L_482 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.2847

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

5I4L|1|6|C|708
5I4L|1|6|C|709
5I4L|1|6|U|710
5I4L|1|6|U|711
5I4L|1|6|G|712
*
5I4L|1|6|C|726
5I4L|1|6|U|727
5I4L|1|6|U|728
5I4L|1|6|G|729
5I4L|1|6|G|730

Current chains

Chain 6

18S ribosomal RNA

Nearby chains