3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
AUAAGGAUUG*CUUGAUUU
Length
18 nucleotides
Bulged bases
5I4L|1|2|G|1228
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5I4L_494 not in the Motif Atlas
Homologous match to IL_8P9A_470
Geometric discrepancy: 0.2703
The information below is about IL_8P9A_470
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28304.1
Basepair signature
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
Number of instances in this motif group
1

Unit IDs

5I4L|1|2|A|1224
5I4L|1|2|U|1225
5I4L|1|2|A|1226
5I4L|1|2|A|1227
5I4L|1|2|G|1228
5I4L|1|2|G|1229
5I4L|1|2|A|1230
5I4L|1|2|U|1231
5I4L|1|2|U|1232
5I4L|1|2|G|1233
*
5I4L|1|2|C|1252
5I4L|1|2|U|1253
5I4L|1|2|U|1254
5I4L|1|2|G|1255
5I4L|1|2|A|1256
5I4L|1|2|U|1257
5I4L|1|2|U|1258
5I4L|1|2|U|1259

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain C0
40S ribosomal protein S10-A
Chain C2
40S ribosomal protein S12
Chain D9
40S ribosomal protein S29-A
Chain E1
Ubiquitin-40S ribosomal protein S31

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2277 s