IL_5I4L_497

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUAG*CAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5I4L_497 not in the Motif Atlas

Geometric match to IL_8P9A_426

Geometric discrepancy: 0.3856

The information below is about IL_8P9A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5I4L|1|2|U|1687
5I4L|1|2|U|1688
5I4L|1|2|A|1689
5I4L|1|2|G|1690
*
5I4L|1|2|C|1711
5I4L|1|2|A|1712
5I4L|1|2|G|1713
5I4L|1|2|A|1714

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N4

60S ribosomal protein L24-A