IL_5IB7_075

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

5IB7|1|14|U|504, 5IB7|1|14|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB7_075 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.0578

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

5IB7|1|14|G|481
5IB7|1|14|A|482
5IB7|1|14|A|483
5IB7|1|14|C|484
*
5IB7|1|14|G|496
5IB7|1|14|A|497
5IB7|1|14|G|498
5IB7|1|14|U|499
5IB7|1|14|G|500
5IB7|1|14|A|501
5IB7|1|14|A|502
5IB7|1|14|A|503
5IB7|1|14|U|504
5IB7|1|14|A|505
5IB7|1|14|G|506
5IB7|1|14|A|507
5IB7|1|14|G|508
5IB7|1|14|C|509

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain A5

50S ribosomal protein L22

Chain C5

50S ribosomal protein L24