3D structure

PDB id
5IB7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
2.99 Å

Loop

Sequence
UCC*GG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5IB7_147 not in the Motif Atlas
Geometric match to IL_7TZS_003
Geometric discrepancy: 0.3767
The information below is about IL_7TZS_003
Detailed Annotation
Minor groove platform related
Broad Annotation
Minor groove platform related
Motif group
IL_51454.3
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
45

Unit IDs

5IB7|1|14|U|2401
5IB7|1|14|C|2402
5IB7|1|14|C|2403
*
5IB7|1|14|G|2414
5IB7|1|14|G|2415

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

Chain 35
50S ribosomal protein L15
Chain F5
50S ribosomal protein L28
Chain M5
50S ribosomal protein L35

Coloring options:


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