3D structure

PDB id
5IB7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
2.99 Å

Loop

Sequence
GAUAAC*GGAAGC
Length
12 nucleotides
Bulged bases
5IB7|1|14|A|2765
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5IB7_163 not in the Motif Atlas
Homologous match to IL_5J7L_350
Geometric discrepancy: 0.147
The information below is about IL_5J7L_350
Detailed Annotation
UAA/GAN with extra cWW
Broad Annotation
No text annotation
Motif group
IL_49767.8
Basepair signature
cWW-cWW-tWH-L-tHS-cWW
Number of instances in this motif group
6

Unit IDs

5IB7|1|14|G|2737
5IB7|1|14|A|2738
5IB7|1|14|U|2739
5IB7|1|14|A|2740
5IB7|1|14|A|2741
5IB7|1|14|C|2742
*
5IB7|1|14|G|2762
5IB7|1|14|G|2763
5IB7|1|14|A|2764
5IB7|1|14|A|2765
5IB7|1|14|G|2766
5IB7|1|14|C|2767

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

Chain 15
50S ribosomal protein L13
Chain 59
50S ribosomal protein L6

Coloring options:


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