IL_5IB7_183
3D structure
- PDB id
- 5IB7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.99 Å
Loop
- Sequence
- CAUCAG*CGACGACG
- Length
- 14 nucleotides
- Bulged bases
- 5IB7|1|1G|U|244, 5IB7|1|1G|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IB7_183 not in the Motif Atlas
- Homologous match to IL_4LFB_011
- Geometric discrepancy: 0.0878
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5IB7|1|1G|C|242
5IB7|1|1G|A|243
5IB7|1|1G|U|244
5IB7|1|1G|C|245
5IB7|1|1G|A|246
5IB7|1|1G|G|247
*
5IB7|1|1G|C|277
5IB7|1|1G|G|278
5IB7|1|1G|A|279
5IB7|1|1G|C|280
5IB7|1|1G|G|281
5IB7|1|1G|A|282
5IB7|1|1G|C|283
5IB7|1|1G|G|284
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 3A
- 30S ribosomal protein S12
- Chain 8A
- 30S ribosomal protein S17
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