3D structure

PDB id
5IB7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
2.99 Å

Loop

Sequence
CGGCCAAC*GG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5IB7_192 not in the Motif Atlas
Homologous match to IL_4LFB_020
Geometric discrepancy: 0.0932
The information below is about IL_4LFB_020
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_41203.4
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
11

Unit IDs

5IB7|1|1G|C|504
5IB7|1|1G|G|505
5IB7|1|1G|G|506
5IB7|1|1G|C|507
5IB7|1|1G|C|508
5IB7|1|1G|A|509
5IB7|1|1G|A|510
5IB7|1|1G|C|511
*
5IB7|1|1G|G|540
5IB7|1|1G|G|541

Current chains

Chain 1G
16S ribosomal RNA

Nearby chains

Chain 32
30S ribosomal protein S4
Chain 3A
30S ribosomal protein S12

Coloring options:


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