IL_5IB7_218
3D structure
- PDB id
- 5IB7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.99 Å
Loop
- Sequence
- UACAAAG*CAAAAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IB7_218 not in the Motif Atlas
- Homologous match to IL_4LFB_051
- Geometric discrepancy: 0.1448
- The information below is about IL_4LFB_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09129.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5IB7|1|1G|U|1247
5IB7|1|1G|A|1248
5IB7|1|1G|C|1249
5IB7|1|1G|A|1250
5IB7|1|1G|A|1251
5IB7|1|1G|A|1252
5IB7|1|1G|G|1253
*
5IB7|1|1G|C|1284
5IB7|1|1G|A|1285
5IB7|1|1G|A|1286
5IB7|1|1G|A|1287
5IB7|1|1G|A|1288
5IB7|1|1G|A|1289
5IB7|1|1G|G|1290
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 1A
- 30S ribosomal protein S10
- Chain 1B
- 30S ribosomal protein Thx
- Chain 5A
- 30S ribosomal protein S14 type Z
- Chain 62
- 30S ribosomal protein S7
- Chain 82
- 30S ribosomal protein S9
Coloring options: