IL_5IB7_241

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

5IB7|1|1H|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB7_241 not in the Motif Atlas

Homologous match to IL_7RQB_011

Geometric discrepancy: 0.11

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5IB7|1|1H|C|280
5IB7|1|1H|G|281
5IB7|1|1H|A|282
5IB7|1|1H|A|283
5IB7|1|1H|U|284
*
5IB7|1|1H|A|357
5IB7|1|1H|U|358
5IB7|1|1H|A|359
5IB7|1|1H|G|360

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains