IL_5IB7_274

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5IB7|1|1H|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB7_274 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.101

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

5IB7|1|1H|C|1208
5IB7|1|1H|G|1209
5IB7|1|1H|A|1210
5IB7|1|1H|U|1211
5IB7|1|1H|G|1212
5IB7|1|1H|A|1213
5IB7|1|1H|A|1214
5IB7|1|1H|G|1215
*
5IB7|1|1H|U|1234
5IB7|1|1H|G|1235
5IB7|1|1H|G|1236
5IB7|1|1H|A|1237
5IB7|1|1H|G|1238

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain C8

50S ribosomal protein L20