IL_5IB8_007

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

5IB8|1|13|G|129|||A, 5IB8|1|13|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB8_007 not in the Motif Atlas

Homologous match to IL_6CZR_119

Geometric discrepancy: 0.1722

The information below is about IL_6CZR_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_33761.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

5IB8|1|13|U|129
5IB8|1|13|G|129|||A
5IB8|1|13|A|130
5IB8|1|13|C|131
*
5IB8|1|13|G|231
5IB8|1|13|G|232

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 7I

30S ribosomal protein S16

Chain 8I

30S ribosomal protein S17

Chain BI

30S ribosomal protein S20