IL_5IB8_032

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB8_032 not in the Motif Atlas

Homologous match to IL_5J7L_036

Geometric discrepancy: 0.1205

The information below is about IL_5J7L_036

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

5IB8|1|13|G|774
5IB8|1|13|G|775
5IB8|1|13|G|776
5IB8|1|13|A|777
5IB8|1|13|G|778
*
5IB8|1|13|U|804
5IB8|1|13|C|805

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 1H

Large subunit ribosomal RNA; LSU rRNA

Chain 2I

30S ribosomal protein S11