IL_5IB8_072

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

5IB8|1|14|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB8_072 not in the Motif Atlas

Homologous match to IL_7RQB_011

Geometric discrepancy: 0.2578

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5IB8|1|14|C|280
5IB8|1|14|G|281
5IB8|1|14|A|282
5IB8|1|14|A|283
5IB8|1|14|U|284
*
5IB8|1|14|A|357
5IB8|1|14|U|358
5IB8|1|14|A|359
5IB8|1|14|G|360

Current chains

Chain 14

23S ribosomal RNA

Nearby chains