IL_5IB8_104

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5IB8|1|14|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB8_104 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1136

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

5IB8|1|14|C|1208
5IB8|1|14|G|1209
5IB8|1|14|A|1210
5IB8|1|14|U|1211
5IB8|1|14|G|1212
5IB8|1|14|A|1213
5IB8|1|14|A|1214
5IB8|1|14|G|1215
*
5IB8|1|14|U|1234
5IB8|1|14|G|1235
5IB8|1|14|G|1236
5IB8|1|14|A|1237
5IB8|1|14|G|1238

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 85

50S ribosomal protein L20