IL_5IB8_109

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

5IB8|1|14|A|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB8_109 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.0749

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

5IB8|1|14|C|1351
5IB8|1|14|U|1352
5IB8|1|14|A|1353
5IB8|1|14|A|1354
5IB8|1|14|G|1355
*
5IB8|1|14|C|1376
5IB8|1|14|G|1377
5IB8|1|14|A|1378
5IB8|1|14|A|1379
5IB8|1|14|G|1380

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain L5

50S ribosomal protein L34