IL_5IB8_120

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

5IB8|1|14|C|1544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB8_120 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.2752

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5IB8|1|14|G|1526
5IB8|1|14|G|1527
5IB8|1|14|A|1528
5IB8|1|14|A|1529
5IB8|1|14|G|1530
*
5IB8|1|14|U|1541
5IB8|1|14|G|1542
5IB8|1|14|A|1543
5IB8|1|14|C|1544
5IB8|1|14|A|1545
5IB8|1|14|A|1545|||A
5IB8|1|14|C|1546

Current chains

Chain 14

23S ribosomal RNA

Nearby chains