IL_5IB8_141

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

GCCUG*CUGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB8_141 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.393

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

5IB8|1|14|G|2106
5IB8|1|14|C|2107
5IB8|1|14|C|2108
5IB8|1|14|U|2109
5IB8|1|14|G|2110
*
5IB8|1|14|C|2179
5IB8|1|14|U|2180
5IB8|1|14|G|2181
5IB8|1|14|G|2182
5IB8|1|14|C|2183

Current chains

Chain 14

23S ribosomal RNA

Nearby chains