IL_5IB8_162

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

5IB8|1|14|U|2689, 5IB8|1|14|C|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB8_162 not in the Motif Atlas

Homologous match to IL_7RQB_105

Geometric discrepancy: 0.0992

The information below is about IL_7RQB_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.3

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

5IB8|1|14|U|2687
5IB8|1|14|U|2688
5IB8|1|14|U|2689
5IB8|1|14|C|2690
5IB8|1|14|C|2691
*
5IB8|1|14|G|2718
5IB8|1|14|G|2719
5IB8|1|14|U|2720
5IB8|1|14|A|2721
5IB8|1|14|G|2722

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L3

Chain 55

50S ribosomal protein L17

Chain 75

50S ribosomal protein L19