IL_5IB8_164

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

5IB8|1|14|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB8_164 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.0895

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5IB8|1|14|G|2737
5IB8|1|14|A|2738
5IB8|1|14|U|2739
5IB8|1|14|A|2740
5IB8|1|14|A|2741
5IB8|1|14|C|2742
*
5IB8|1|14|G|2762
5IB8|1|14|G|2763
5IB8|1|14|A|2764
5IB8|1|14|A|2765
5IB8|1|14|G|2766
5IB8|1|14|C|2767

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 59

50S ribosomal protein L6