IL_5IB8_179

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

5IB8|1|1G|G|129|||A, 5IB8|1|1G|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB8_179 not in the Motif Atlas

Homologous match to IL_4LFB_007

Geometric discrepancy: 0.1505

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_33761.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

5IB8|1|1G|U|129
5IB8|1|1G|G|129|||A
5IB8|1|1G|A|130
5IB8|1|1G|C|131
*
5IB8|1|1G|G|231
5IB8|1|1G|G|232

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 7A

30S ribosomal protein S16

Chain 8A

30S ribosomal protein S17

Chain BA

30S ribosomal protein S20