IL_5IB8_181

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

5IB8|1|1G|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB8_181 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.0875

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

5IB8|1|1G|G|148
5IB8|1|1G|A|149
5IB8|1|1G|C|150
5IB8|1|1G|A|151
5IB8|1|1G|A|152
5IB8|1|1G|C|153
*
5IB8|1|1G|G|168
5IB8|1|1G|C|169
5IB8|1|1G|U|170
5IB8|1|1G|A|171
5IB8|1|1G|A|172
5IB8|1|1G|U|173
5IB8|1|1G|C|174

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain BA

30S ribosomal protein S20