IL_5IB8_222

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

5IB8|1|1G|C|1400, 5IB8|1|1G|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB8_222 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2119

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

5IB8|1|1G|C|1399
5IB8|1|1G|C|1400
5IB8|1|1G|G|1401
*
5IB8|1|1G|C|1501
5IB8|1|1G|A|1502
5IB8|1|1G|A|1503
5IB8|1|1G|G|1504

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 2L

Transfer RNA; tRNA

Chain 4L

mRNA