IL_5IB8_315

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CAG*CGGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB8_315 not in the Motif Atlas

Geometric match to IL_7RQB_088

Geometric discrepancy: 0.2293

The information below is about IL_7RQB_088

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5IB8|1|1H|C|2297
5IB8|1|1H|A|2298
5IB8|1|1H|G|2299
*
5IB8|1|1H|C|2317
5IB8|1|1H|G|2318
5IB8|1|1H|G|2319
5IB8|1|1H|A|2320
5IB8|1|1H|G|2321

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 16

5S ribosomal RNA; 5S rRNA

Chain 41

50S ribosomal protein L5

Chain A8

50S ribosomal protein L18

Chain I8

50S ribosomal protein L27