IL_5IB8_328

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

5IB8|1|1H|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB8_328 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0526

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5IB8|1|1H|U|2636
5IB8|1|1H|U|2637
5IB8|1|1H|G|2638
5IB8|1|1H|A|2639
5IB8|1|1H|G|2640
*
5IB8|1|1H|C|2774
5IB8|1|1H|A|2775
5IB8|1|1H|A|2776
5IB8|1|1H|G|2777
5IB8|1|1H|A|2778
5IB8|1|1H|U|2779
5IB8|1|1H|G|2780
5IB8|1|1H|A|2781
5IB8|1|1H|G|2782

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain 58

50S ribosomal protein L13